STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_239Hypothetical protein; [L] COG2801 Transposase and inactivated derivatives; transposase and inactivated derivative. (282 aa)    
Predicted Functional Partners:
EDZ46201.1
Transposase; [L] COG2963 Transposase and inactivated derivatives.
 
    0.790
RBY4I_864
Transposase; [L] COG2801 Transposase and inactivated derivatives.
 
    
0.527
EDZ45879.1
Transposase IS3/family protein; [L] COG2963 Transposase and inactivated derivatives.
 
    0.477
EDZ45937.1
Transposase IS3/family protein; [L] COG2963 Transposase and inactivated derivatives.
 
    0.477
EDZ46252.1
Transposase IS3/family protein; [L] COG2963 Transposase and inactivated derivatives.
 
    0.477
EDZ47614.1
Transposase IS3/family protein; [L] COG2963 Transposase and inactivated derivatives.
 
    0.477
EDZ47651.1
Transposase IS3/family protein; [L] COG2963 Transposase and inactivated derivatives.
 
    0.477
EDZ48658.1
Transposase IS3/family protein; [L] COG2963 Transposase and inactivated derivatives.
 
    0.477
RBY4I_408
Resolvase; [L] COG1961 Site-specific recombinases, DNA invertase Pin homologs.
       0.452
RBY4I_648
Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.
       0.428
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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