STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47180.1Acetyltransferase, gnat family; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases. (174 aa)    
Predicted Functional Partners:
argG
[E] COG0137 Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 
 0.631
EDZ48330.1
Hypothetical protein.
       0.576
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
  
 
 0.520
argH
Argininosuccinate lyase; [C] COG0114 Fumarase.
  
 
 0.517
argJ
Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.
  
 
 0.514
RBY4I_286
DNA-binding protein; [K] COG1396 Predicted transcriptional regulators.
    
  0.439
EDZ47823.1
Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.
    
  0.439
EDZ48168.1
Hypothetical protein; [R] COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold; esterase/lipase/thioesterase family active site.
       0.439
EDZ48280.1
Transcriptional regulator, XRE family; [S] COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
    
  0.439
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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