STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
glkGlucokinase; [G] COG0837 Glucokinase; Belongs to the bacterial glucokinase family. (295 aa)    
Predicted Functional Partners:
eda
Khg/kdpg aldolase; [G] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
 
 
 0.925
pgi
[G] COG0166 Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
 0.923
edd
Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
 
 
 0.890
pgl
6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
  
 
 0.858
RBY4I_34
Binding-protein-dependent transport systems inner membrane component; [G] COG0395 ABC-type sugar transport system, permease component; overlaps another CDS with the same product name.
 
   
 0.836
EDZ46516.1
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; [G] COG1109 Phosphomannomutase.
     
 0.834
tkt
Transketolase; [C] COG2609 Pyruvate dehydrogenase complex, dehydrogenase (E1) component; Belongs to the transketolase family.
    
 0.828
tal
Transaldolase, putative; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
    
 0.824
RBY4I_11
[G] COG1175 ABC-type sugar transport systems, permease components; overlaps another CDS with the same product name.
 
     0.816
exaA
Quinoprotein alcohol dehydrogenase; [S] COG1520 FOG: WD40-like repeat.
     
 0.782
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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