STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47204.1Transcriptional regulator, TetR family; [K] COG1309 Transcriptional regulator. (222 aa)    
Predicted Functional Partners:
EDZ47888.1
N-carbamoyl-L-amino acid amidohydrolase; [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
 
     0.609
RBY4I_997
Binding-protein-dependent transport systems inner membrane component; [E] COG4176 ABC-type proline/glycine betaine transport system, permease component.
 
     0.572
EDZ45830.1
ABC transporter, ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components.
 
     0.570
hydA_1
Dihydropyrimidinase; [F] COG0044 Dihydroorotase and related cyclic amidohydrolases.
 
     0.540
EDZ45850.1
Binding-protein-dependent transport systems inner membrane component; [E] COG4176 ABC-type proline/glycine betaine transport system, permease component.
 
     0.520
EDZ46577.1
ABC transporter, periplasmic substrate-binding protein; [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
     0.516
EDZ48662.1
KR domain family; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
     
 0.407
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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