STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47214.1Oligopeptide/dipeptide ABC transporter, periplasmic substrate-binding protein; [E] COG0747 ABC-type dipeptide transport system, periplasmic component. (554 aa)    
Predicted Functional Partners:
RBY4I_407
[EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.936
EDZ47169.1
Oligopeptide/dipeptide ABC transporter, permease protein; [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.926
EDZ47824.1
Oligopeptide/dipeptide transporter domain family protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
 
 
  0.887
RBY4I_529
[EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; overlaps another CDS with the same product name.
  
  0.678
RBY4I_271
Binding-protein-dependent transport systems inner membrane component; [V] COG4171 ABC-type antimicrobial peptide transport system, permease component; overlaps another CDS with the same product name.
 
  0.657
EDZ48750.1
Trimethylamine methyltransferase; [S] COG1385 Uncharacterized protein conserved in bacteria; Belongs to the trimethylamine methyltransferase family.
  
     0.648
EDZ46022.1
[I] COG3239 Fatty acid desaturase.
  
     0.632
EDZ44887.1
[EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
  0.597
EDZ47597.1
Peptide/nickel/opine uptake family ABC transporter, permease protein; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
  0.588
RBY4I_247
[E] COG4583 Sarcosine oxidase gamma subunit.
  
     0.583
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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