STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47255.1Conserved hypothetical protein; [R] COG0730 Predicted permeases. (248 aa)    
Predicted Functional Partners:
EDZ47734.1
Thiamine pyrophosphate enzyme, central domain family; [EH] COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; Belongs to the TPP enzyme family.
       0.773
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
       0.747
RBY4I_637
Conserved hypothetical protein.
  
     0.569
EDZ48424.1
Molybdopterin oxidoreductase Fe4S4 domain family; [C] COG5013 Nitrate reductase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.557
dmsC
[R] COG3302 DMSO reductase anchor subunit.
 
     0.538
EDZ47747.1
Transcriptional regulator, GntR family; [K] COG1725 Predicted transcriptional regulators.
 
     0.521
EDZ47650.1
[S] COG2855 Predicted membrane protein.
  
    0.511
EDZ46009.1
[R] COG3173 Predicted aminoglycoside phosphotransferase.
  
     0.464
EDZ46489.1
Surface presentation of antigens protein.
  
 
   0.454
EDZ48041.1
Iron-sulfur cluster-binding protein; [C] COG1145 Ferredoxin.
 
    0.446
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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