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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RBY4I_25PimS2 protein; [C] COG0644 Dehydrogenases (flavoproteins). (405 aa)    
Predicted Functional Partners:
RBY4I_22
Radical SAM domain protein; [R] COG0641 Arylsulfatase regulator (Fe-S oxidoreductase).
 
     0.942
EDZ48662.1
KR domain family; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
  
 0.853
etfB
[C] COG2086 Electron transfer flavoprotein, beta subunit.
  
 
 0.805
RBY4I_57
Quinohemoprotein amine dehydrogenase, alpha subunit.
  
    0.796
etf
Electrotransfer ubiquinone oxidoreductase protein; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.788
RBY4I_5
[V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
   
 0.781
qhpC
Quinohemoprotein amine dehydrogenase gamma subunit.
       0.758
RBY4I_41
Transcriptional Regulator, AraC family, putative; [K] COG2207 AraC-type DNA-binding domain-containing proteins.
 
     0.724
etfA
[C] COG2025 Electron transfer flavoprotein, alpha subunit.
  
 
 0.714
EDZ45848.1
Putative site-specific recombinase, phage integrase family protein; Belongs to the 'phage' integrase family.
  
     0.703
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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