STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_250phytanoyl-CoA dioxygenase family protein; [Q] COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin. (265 aa)    
Predicted Functional Partners:
EDZ48662.1
KR domain family; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
  
 0.686
EDZ46590.1
Transcriptional regulator, LysR family; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.649
EDZ47939.1
Metal dependent phosphohydrolase; [R] COG4341 Predicted HD phosphohydrolase.
 
  
  0.583
EDZ48755.1
Conserved hypothetical protein; [R] COG4341 Predicted HD phosphohydrolase.
 
  
  0.573
EDZ46522.1
Peptidase M24; [E] COG0006 Xaa-Pro aminopeptidase.
 
  
 0.556
EDZ45811.1
Cupin domain protein.
 
  
 0.555
EDZ46325.1
3-ketoacyl-CoA thiolase; [I] COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.547
phbA_2
[I] COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.547
pcaF
Beta-ketoadipyl CoA thiolase; [I] COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.547
EDZ47938.1
[I] COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.547
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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