STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47311.1Cytochrome c oxidase, cbb3-type, CcoQ subunit, putative; [O] COG4736 Cbb3-type cytochrome oxidase, subunit 3. (78 aa)    
Predicted Functional Partners:
ccoP
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
 0.999
ccoO
[C] COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
 
 
 0.999
ccoN
[C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.999
ccoG
Cytochrome c oxidase accessory protein CcoG; [C] COG0348 Polyferredoxin.
 
  
 0.998
EDZ47520.1
Conserved hypothetical protein.
   
    0.955
EDZ47627.1
[S] COG2841 Uncharacterized protein conserved in bacteria.
  
    0.954
RBY4I_484
FixH; [P] COG5456 Predicted integral membrane protein linked to a cation pump.
 
  
 0.938
EDZ46791.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
 
 0.922
ccoS
Cytochrome oxidase maturation protein, cbb3-type; [P] COG3197 Uncharacterized protein, possibly involved in nitrogen fixation.
 
 
 0.859
EDZ46186.1
[NT] COG0840 Methyl-accepting chemotaxis protein.
     
 0.824
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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