STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RBY4I_253[C] COG1012 NAD-dependent aldehyde dehydrogenases. (462 aa)    
Predicted Functional Partners:
EDZ46080.1
[C] COG1454 Alcohol dehydrogenase, class IV.
 0.947
glnA_3
[E] COG0174 Glutamine synthetase.
 
 
  0.894
EDZ46059.1
Tripartite ATP-independent periplasmic transporter, DctQ component; [Q] COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
     0.853
EDZ46441.1
Bacterial extracellular solute-binding protein, family 7; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
     0.837
EDZ48662.1
KR domain family; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
  
 0.832
EDZ48698.1
Transcriptional regulator, RpiR family; [K] COG1737 Transcriptional regulators.
 
 
  0.814
EDZ45947.1
[E] COG3931 Predicted N-formylglutamate amidohydrolase.
 
     0.807
EDZ47798.1
[G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
     0.806
EDZ48643.1
Hypothetical protein; [C] COG2218 Formylmethanofuran dehydrogenase subunit C; Conserved region in glutamate synthase family.
  
 
 0.775
EDZ48635.1
Reductive dehalogenase subfamily, putative; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 
 0.724
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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