STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47323.1EF hand domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (158 aa)    
Predicted Functional Partners:
EDZ48271.1
RNA polymerase, sigma-24 subunit, ECF subfamily; [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; overlaps another CDS with the same product name.
 
     0.797
EDZ48706.1
Conserved hypothetical protein.
 
     0.705
RBY4I_959
Conserved hypothetical protein.
 
     0.679
EDZ47770.1
RNA polymerase, sigma-24 subunit, ECF subfamily; [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; overlaps another CDS with the same product name; Belongs to the sigma-70 factor family. ECF subfamily.
       0.611
EDZ46085.1
Pterin-binding enzyme domain protein; [E] COG1410 Methionine synthase I, cobalamin-binding domain.
   
 
  0.510
EDZ46118.1
Homocysteine S-methyltransferase; [E] COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain.
   
 
  0.508
RBY4I_704
[S] COG3453 Uncharacterized protein conserved in bacteria.
     
  0.507
ahcY
Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
     
  0.505
EDZ48670.1
Hydrolase, nudix family; [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
       0.495
metY
O-acetylhomoserine sulfhydrylase; [E] COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases.
     
  0.489
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.