STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RBY4I_255Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (182 aa)    
Predicted Functional Partners:
EDZ48662.1
KR domain family; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
  
 0.970
mepA
Peptidoglycan amidase MepA; [M] COG3770 Murein endopeptidase.
  
    0.718
EDZ45987.1
[S] COG4246 Uncharacterized protein conserved in bacteria.
       0.717
EDZ48084.1
[GEPR] COG0477 Permeases of the major facilitator superfamily.
       0.717
RBY4I_457
Yggt family protein; [S] COG0762 Predicted integral membrane protein.
       0.653
EDZ47667.1
Peroxisomal bifunctional enzyme; [I] COG1250 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.634
EDZ48199.1
3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 
 0.634
EDZ47369.1
[IQ] COG0236 Acyl carrier protein; phosphopantetheine-binding.
 
 0.597
EDZ47044.1
Conserved hypothetical protein.
 
     0.527
EDZ46991.1
Transmembrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.
       0.512
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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