STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifS[E] COG0520 Selenocysteine lyase. (347 aa)    
Predicted Functional Partners:
EDZ47708.1
Nitrogen-fixing NifU domain protein; [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
  
 0.999
EDZ47199.1
Uncharacterized protein family UPF0033; [O] COG0425 Predicted redox protein, regulator of disulfide bond formation; Belongs to the sulfur carrier protein TusA family.
   
 0.996
EDZ48416.1
Transcriptional regulator, BadM/Rrf2 family; [K] COG1959 Predicted transcriptional regulator.
 
 
 0.987
EDZ47891.1
Ferredoxin; [C] COG0633 Ferredoxin.
 
 0.986
EDZ48662.1
KR domain family; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
    
 
 0.950
selD
Selenide, water dikinase; [O] COG0309 Hydrogenase maturation factor.
 
 
 0.948
EDZ46959.1
HesB/YadR/YfhF; [S] COG0316 Uncharacterized conserved protein; Belongs to the HesB/IscA family.
 
  
 0.947
EDZ48635.1
Reductive dehalogenase subfamily, putative; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 0.942
RBY4I_210
60Kd inner membrane protein; [U] COG0706 Preprotein translocase subunit YidC.
  
 0.939
EDZ45002.1
Oxidoreductase, FAD-binding; [C] COG0633 Ferredoxin.
  
 0.922
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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