STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47357.1[I] COG3000 Sterol desaturase. (264 aa)    
Predicted Functional Partners:
EDZ47004.1
Conserved hypothetical protein; [I] COG1562 Phytoene/squalene synthetase.
  
 0.822
EDZ46721.1
N-terminal double-transmembrane domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
 0.792
EDZ46924.1
Phosphoglycerate mutase family protein; [T] COG2062 Phosphohistidine phosphatase SixA.
       0.622
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
       0.573
EDZ47125.1
Oxidoreductase, FAD/FMN-binding family; [HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
   
 0.561
RBY4I_369
NAD-dependent epimerase/dehydratase; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.
   
 0.539
EDZ48545.1
NAD-dependent epimerase/dehydratase; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.
   
 0.539
EDZ44919.1
NAD-dependent epimerase/dehydratase; [MG] COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
   
 0.539
RBY4I_933
Rb142; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
    
  0.537
EDZ48279.1
Conserved hypothetical protein; [C] COG1145 Ferredoxin.
       0.530
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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