STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47403.1HAD-superfamily subfamily IIA hydrolase, TIGR01459; [G] COG0647 Predicted sugar phosphatases of the HAD superfamily. (296 aa)    
Predicted Functional Partners:
EDZ47109.1
Metal dependent phosphohydrolase; [R] COG1896 Predicted hydrolases of HD superfamily.
 
  
 0.721
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
  
 
 0.682
hisS
histidyl-tRNA synthetase; [E] COG3705 ATP phosphoribosyltransferase involved in histidine biosynthesis.
 
    0.602
EDZ46058.1
Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.
  
     0.593
EDZ45954.1
2-deoxycytidine 5-triphosphate deaminase; [F] COG0717 Deoxycytidine deaminase.
 
    0.561
atpF
ATP synthase B' chain; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
 
  0.556
EDZ46607.1
Hydrolase, alpha/beta fold family; [I] COG2267 Lysophospholipase.
 
  
  0.547
EDZ47842.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.516
EDZ48247.1
[NT] COG0840 Methyl-accepting chemotaxis protein.
       0.494
EDZ48106.1
MaoC domain protein; [I] COG2030 Acyl dehydratase.
  
    0.485
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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