STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_266Conserved hypothetical protein; [S] COG5454 Predicted secreted protein. (91 aa)    
Predicted Functional Partners:
mce
methylmalonyl-CoA epimerase; [E] COG0346 Lactoylglutathione lyase and related lyases.
       0.706
RBY4I_762
Conserved hypothetical protein.
  
     0.651
EDZ47952.1
[S] COG5447 Uncharacterized conserved protein.
  
     0.525
RBY4I_318
Glycosyl transferase, group 2 family protein; [M] COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
  
     0.525
EDZ46389.1
[TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
     0.513
RBY4I_381
Signal transduction histidine kinase regulating citrate/malate metabolism.
  
     0.482
EDZ47626.1
Conserved hypothetical protein.
  
     0.478
EDZ48496.1
Conserved hypothetical protein; [S] COG5462 Predicted secreted (periplasmic) protein.
  
     0.455
RBY4I_605
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.450
RBY4I_437
Conserved hypothetical protein.
  
     0.425
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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