Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RBY4I_268[GEPR] COG0477 Permeases of the major facilitator superfamily. (379 aa)    
Predicted Functional Partners:
EDZ46032.1
Conserved hypothetical protein.
  
  0.605
lpdA_2
[C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.
       0.556
RBY4I_116
Secretion protein HlyD family protein; [V] COG1566 Multidrug resistance efflux pump.
   
  0.545
EDZ48065.1
Type I secretion membrane fusion protein, HlyD; [M] COG0845 Membrane-fusion protein.
   
  0.545
EDZ48294.1
Type I secretion membrane fusion protein, HlyD; [M] COG0845 Membrane-fusion protein.
   
  0.545
EDZ48715.1
Secretion protein HlyD; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
  0.545
RBY4I_595
Sporulation related; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.545
copB
Copper tolerance protein; [MU] COG1538 Outer membrane protein.
   
  0.517
EDZ46571.1
Outer membrane efflux protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
  0.517
EDZ48071.1
Type I secretion outer membrane protein, TolC; [MU] COG1538 Outer membrane protein.
   
  0.517
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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