STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47477.1Conserved hypothetical protein. (108 aa)    
Predicted Functional Partners:
EDZ46054.1
[G] COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.657
EDZ47944.1
Hydratase/decarboxylase; [Q] COG3971 2-keto-4-pentenoate hydratase.
  
 
 0.604
hpaH
2-oxo-hepta-3-ene-1,7-dioic acid hydratase; [Q] COG3971 2-keto-4-pentenoate hydratase.
  
 
 0.604
EDZ47794.1
[R] COG1011 Predicted hydrolase (HAD superfamily).
       0.556
dacF
[M] COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
       0.418
clpS
ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
       0.410
EDZ46796.1
Methyltransferase small; [J] COG2813 16S RNA G1207 methylase RsmC; Belongs to the methyltransferase superfamily.
       0.403
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.