STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47479.1Conserved hypothetical protein. (165 aa)    
Predicted Functional Partners:
EDZ48134.1
3-deoxy-D-manno-octulosonic-acid; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
  
  
  0.703
EDZ46505.1
Lipopolysaccharide biosynthesis; [L] COG0419 ATPase involved in DNA repair.
  
     0.570
EDZ47767.1
Conserved hypothetical protein.
  
     0.545
trpA
Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
       0.524
EDZ48133.1
Conserved hypothetical protein.
  
     0.504
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.489
EDZ47510.1
Putative outer membrane protein; [M] COG3637 Opacity protein and related surface antigens.
  
  
  0.479
RBY4I_101
Twin-arginine translocation pathway signal; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.467
EDZ47951.1
Conserved hypothetical protein.
  
     0.453
EDZ47283.1
Conserved hypothetical protein.
  
     0.449
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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