STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_270Mandelate racemase/muconate lactonizing enzyme family protein. (76 aa)    
Predicted Functional Partners:
EDZ47138.1
Mandelate racemase/muconate lactonizing enzyme family protein.
 
     0.946
RBY4I_247
[E] COG4583 Sarcosine oxidase gamma subunit.
  
     0.705
EDZ48126.1
[G] COG3734 2-keto-3-deoxy-galactonokinase.
  
 
 0.620
EDZ46022.1
[I] COG3239 Fatty acid desaturase.
  
     0.617
EDZ47332.1
Oxidoreductase, zinc-binding dehydrogenase family; [R] COG1064 Zn-dependent alcohol dehydrogenases.
 
     0.554
EDZ46722.1
Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.
  
     0.538
EDZ46778.1
Conserved hypothetical protein; [P] COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.
  
    0.516
EDZ46755.1
Transcriptional regulator, ArsR family; [K] COG0640 Predicted transcriptional regulators.
       0.499
ccmD
Heme exporter protein CcmD; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
  
     0.498
RBY4I_295
Tellurite resistance protein.
  
     0.482
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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