STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_272[S] COG3022 Uncharacterized protein conserved in bacteria; protein RD1_0358; Belongs to the UPF0246 family. (254 aa)    
Predicted Functional Partners:
igiE
[GEPR] COG0477 Permeases of the major facilitator superfamily.
  
    0.871
EDZ47984.1
Major facilitator superfamily MFS_1.
   
    0.782
recQ
[LKJ] COG0513 Superfamily II DNA and RNA helicases.
       0.729
RBY4I_457
Yggt family protein; [S] COG0762 Predicted integral membrane protein.
       0.543
RBY4I_485
FAD dependent oxidoreductase domain protein; [G] COG0380 Trehalose-6-phosphate synthase.
 
     0.424
RBY4I_255
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.412
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.