STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47521.1Conserved hypothetical protein. (287 aa)    
Predicted Functional Partners:
EDZ48662.1
KR domain family; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
  
 0.897
EDZ47930.1
Protein secretion ABC efflux system, permease and ATP-binding protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
   
  0.857
metA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
 
     0.804
EDZ46309.1
[GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
      0.803
RBY4I_283
ABC transporter, ATP-binding/permease protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
    
 0.759
EDZ46477.1
Conserved hypothetical protein; [O] COG0464 ATPases of the AAA+ class.
   
 0.718
EDZ48228.1
Alpha/beta hydrolase fold; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
    0.669
RBY4I_442
Transcriptional regulator, TetR family; [K] COG1309 Transcriptional regulator.
       0.619
EDZ47369.1
[IQ] COG0236 Acyl carrier protein; phosphopantetheine-binding.
  
 
 
 0.595
EDZ47141.1
Conserved hypothetical protein.
  
     0.569
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.