STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_276Rb139; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (347 aa)    
Predicted Functional Partners:
EDZ48426.1
Membrane protein involved in colicin uptake; [S] COG2268 Uncharacterized protein conserved in bacteria.
  
 
 0.921
EDZ46940.1
Type I secretion target repeat protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 0.867
EDZ47475.1
Conserved hypothetical protein; [S] COG5572 Predicted integral membrane protein.
   
    0.821
EDZ46349.1
[S] COG3220 Uncharacterized protein conserved in bacteria.
   
    0.813
EDZ48080.1
Type I secretion target repeat protein; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
 
 
0.769
EDZ48666.1
Rb139; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
 
0.755
EDZ47160.1
Hemolysin-type calcium-binding region; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
0.741
EDZ47314.1
beta-N-acetylhexosaminidase; [G] COG1472 Beta-glucosidase-related glycosidases.
    
  0.695
EDZ48294.1
Type I secretion membrane fusion protein, HlyD; [M] COG0845 Membrane-fusion protein.
 
  
 0.683
EDZ48629.1
Peptidase S8 and S53, subtilisin, kexin, sedolisin, putative; [O] COG1404 Subtilisin-like serine proteases; Belongs to the peptidase S8 family.
 
 
 0.674
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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