STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47543.1Protozoan/cyanobacterial globin family protein; [R] COG2346 Truncated hemoglobins. (122 aa)    
Predicted Functional Partners:
RBY4I_359
Olfactory guanylyl cyclase GC-D, putative; [T] COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
 
     0.940
EDZ48028.1
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; [T] COG2202 FOG: PAS/PAC domain.
    
  0.843
EDZ46337.1
HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.
    
  0.816
EDZ47234.1
[R] COG0110 Acetyltransferase (isoleucine patch superfamily).
  
    0.491
RBY4I_25
PimS2 protein; [C] COG0644 Dehydrogenases (flavoproteins).
  
     0.462
EDZ46648.1
[T] COG0642 Signal transduction histidine kinase.
    
  0.427
EDZ47654.1
Periplasmic sensor hybrid histidine kinase; [T] COG0642 Signal transduction histidine kinase.
  
  
  0.422
EDZ48604.1
[T] COG3920 Signal transduction histidine kinase.
    
  0.421
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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