STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_278Binding-protein-dependent transport systems inner membrane component; [E] COG0765 ABC-type amino acid transport system, permease component. (294 aa)    
Predicted Functional Partners:
RBY4I_436
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; [E] COG0765 ABC-type amino acid transport system, permease component.
 
0.976
RBY4I_819
[ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  0.953
RBY4I_480
His/Glu/Gln/Arg/opine family ABC transporter, ATP-binding protein; [P] COG1135 ABC-type metal ion transport system, ATPase component.
 
 
 0.947
EDZ46222.1
Polar amino acid uptake family ABC transporter, ATP-binding protein; [P] COG1135 ABC-type metal ion transport system, ATPase component.
 
 
 0.876
EDZ46559.1
Polar amino acid ABC transporter, inner membrane subunit; [E] COG0765 ABC-type amino acid transport system, permease component.
 
 
0.721
RBY4I_582
[ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.
  0.719
EDZ45895.1
Polar amino acid uptake family ABC transporter, permease protein; [E] COG0765 ABC-type amino acid transport system, permease component.
 
 
 0.694
EDZ47982.1
Polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  0.676
EDZ47615.1
[P] COG1135 ABC-type metal ion transport system, ATPase component.
 
  
  0.660
EDZ47537.1
Glutamate/glutamine/aspartate/asparagine ABC transporter, ATP-binding protein; [E] COG1126 ABC-type polar amino acid transport system, ATPase component.
 
  
  0.587
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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