STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaIphenylacetate-CoA oxygenase, PaaI subunit; [S] COG3396 Uncharacterized conserved protein. (253 aa)    
Predicted Functional Partners:
paaG
phenylacetate-CoA oxygenase, PaaG subunit; [S] COG3396 Uncharacterized conserved protein.
 0.999
paaH
phenylacetate-CoA oxygenase, PaaH subunit; [Q] COG3460 Uncharacterized enzyme of phenylacetate metabolism.
 0.999
paaJ
phenylacetate-CoA oxygenase, PaaJ subunit; [R] COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.
 
 0.998
paaK
Phenylacetic acid degradation oxidoreductase PaaK; [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
 0.991
paaD
Phenylacetic acid degradation protein PaaD; [Q] COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
 
 
 0.978
RBY4I_689
Phenylacetic acid catabolic family protein; [S] COG3396 Uncharacterized conserved protein.
 
  
  0.974
paaN
Phenylacetic acid degradation protein paaN; [C] COG1012 NAD-dependent aldehyde dehydrogenases.
 
  
 0.929
EDZ46647.1
Ferredoxin; [C] COG0633 Ferredoxin.
  
 0.872
EDZ47382.1
[I] COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
 
 0.872
paaB
Phenylacetate degradation probable enoyl-CoA hydratase paaB; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
 
 0.862
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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