STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47611.1Tetratricopeptide repeat domain protein; [R] COG0457 FOG: TPR repeat. (484 aa)    
Predicted Functional Partners:
cyaF_1
[T] COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
   
 0.858
RBY4I_444
Adenylate cyclase Cya3; [R] COG0457 FOG: TPR repeat.
   
 0.858
ribB
Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.725
EDZ47235.1
Adenylyl cyclase class-3/4/guanylyl cyclase; [R] COG0457 FOG: TPR repeat.
   
  0.692
RBY4I_604
Peptidase M23B; [D] COG4942 Membrane-bound metallopeptidase.
   
   0.585
mcpE
[NT] COG0840 Methyl-accepting chemotaxis protein.
    
 0.534
EDZ46337.1
HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.
    
 0.533
EDZ48028.1
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; [T] COG2202 FOG: PAS/PAC domain.
    
  0.529
EDZ47065.1
TPR/sulfotransferase domain protein; [R] COG0457 FOG: TPR repeat.
 
 
 
0.516
EDZ46661.1
[NT] COG0840 Methyl-accepting chemotaxis protein.
    
  0.507
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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