STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_283ABC transporter, ATP-binding/permease protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components. (609 aa)    
Predicted Functional Partners:
RBY4I_5
[V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
  
0.853
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
     
  0.759
EDZ46272.1
ABC transporter, permease/ATP-binding protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
  
 
0.755
EDZ47526.1
SufBD; [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
   
 0.748
sufB
FeS assembly protein SufB; [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
   
 0.748
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
   
 
 0.746
EDZ47342.1
ABC transporter, transmembrane ATP-binding protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
  
 
0.740
RBY4I_796
Cyclic nucleotide-binding domain protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
    
 0.704
EDZ46774.1
Lipid A export ATP-binding/permease protein MsbA; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
    
 0.699
EDZ47521.1
Conserved hypothetical protein.
    
 0.699
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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