STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cse4CRISPR-associated protein, Cse4 family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (353 aa)    
Predicted Functional Partners:
cas5e
CRISPR-associated protein Cas5, Ecoli subtype; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 
 0.998
EDZ48480.1
Conserved hypothetical protein.
  
 
 0.995
cse2
CRISPR-associated protein, Cse2 family.
  
 
 0.989
cse3
CRISPR-associated protein, Cse3 family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  
 0.964
cas1
CRISPR-associated protein Cas1; [L] COG1518 Uncharacterized protein predicted to be involved in DNA repair.
 
  
 0.941
RBY4I_823
Crispr-associated family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  
 0.904
EDZ48130.1
[L] COG2801 Transposase and inactivated derivatives.
       0.558
ccmE
CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
   
  
 0.506
EDZ45890.1
Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.
       0.465
RBY4I_903
Hypothetical protein.
       0.434
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.