STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47640.1Conserved hypothetical protein; [Q] COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component. (308 aa)    
Predicted Functional Partners:
EDZ48373.1
TRAP transporter, DctM-like membrane protein; [R] COG4666 TRAP-type uncharacterized transport system, fused permease components.
 
 
  0.994
EDZ47760.1
Bacterial extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.850
EDZ46150.1
Sensor histidine kinase; [T] COG4585 Signal transduction histidine kinase.
 
     0.763
narL
[NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
 
     0.627
EDZ46255.1
OmpA/MotB; [P] COG0226 ABC-type phosphate transport system, periplasmic component.
  
     0.553
EDZ47552.1
Conserved hypothetical protein; [R] COG0730 Predicted permeases.
  
     0.445
EDZ45836.1
Conserved hypothetical protein.
  
     0.428
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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