STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RBY4I_286DNA-binding protein; [K] COG1396 Predicted transcriptional regulators. (189 aa)    
Predicted Functional Partners:
EDZ45822.1
Glycine cleavage T-protein (aminomethyl transferase); [C] COG0578 Glycerol-3-phosphate dehydrogenase; Belongs to the GcvT family.
 
 
 0.855
EDZ47405.1
Glutathione-dependent formaldehyde-activating, GFA; [S] COG3791 Uncharacterized conserved protein.
 
     0.809
EDZ47453.1
Phosphate acetyl/butyryl transferase subfamily, putative; [C] COG0281 Malic enzyme.
    
 0.703
EDZ47823.1
Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.
  
 
 0.703
RBY4I_385
Phosphate acetyl/butyryl transferase subfamily, putative; [C] COG0281 Malic enzyme.
    
 0.703
EDZ47275.1
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; [M] COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 0.673
EDZ48727.1
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; [M] COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 0.673
EDZ47189.1
Transcriptional regulator, XRE family with cupin sensor; [K] COG1396 Predicted transcriptional regulators.
  
 
  0.671
EDZ46610.1
Glycine cleavage T-protein (aminomethyl transferase); [E] COG0665 Glycine/D-amino acid oxidases (deaminating); Belongs to the GcvT family.
 
 
 0.658
nadE
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.591
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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