STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
eutBEctoine utilization protein EutB; [E] COG0031 Cysteine synthase. (335 aa)    
Predicted Functional Partners:
eutC
Ectoine utilization protein EutC; [E] COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog.
 
 
 0.917
eutD
Ectoine utilization protein EutD; [E] COG0006 Xaa-Pro aminopeptidase.
 
     0.796
eutE
Ectoine utilization protein EutE; [R] COG3608 Predicted deacylase.
 
     0.785
eutA
Ectoine utilization protein EutA; [Q] COG3473 Maleate cis-trans isomerase.
 
     0.771
RBY4I_28
Trap dicarboxylate transporter, dctq subunit; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.759
RBY4I_26
Trap dicarboxylate transporter, dctm subunit; [R] COG4666 TRAP-type uncharacterized transport system, fused permease components.
 
     0.747
RBY4I_61
Transcriptional regulator, AsnC family; [K] COG1522 Transcriptional regulators.
 
     0.741
RBY4I_81
[T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
       0.722
EDZ46354.1
Aminotransferase, class III family; [E] COG4992 Ornithine/acetylornithine aminotransferase.
  
 
 0.720
leuB
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
 
 0.682
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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