STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47692.1Site-specific recombinase, phage integrase family protein; [L] COG0582 Integrase; Belongs to the 'phage' integrase family. (367 aa)    
Predicted Functional Partners:
RBY4I_316
Primase C terminal 2 family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.814
RBY4I_319
Hypothetical protein.
       0.718
EDZ48015.1
Hypothetical protein.
       0.529
EDZ46857.1
[L] COG0582 Integrase.
  
     0.464
EDZ46117.1
Hypothetical protein.
       0.452
EDZ48208.1
Hypothetical protein.
       0.448
EDZ48462.1
Peptidase U35, phage prohead HK97; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
  
 0.431
comF
Competence protein F; [R] COG1040 Predicted amidophosphoribosyltransferases.
   
    0.408
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.404
RBY4I_398
Phage integrase family protein; [L] COG0582 Integrase.
 
 
 
 0.403
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.