STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrrMrr restriction system protein; [V] COG1715 Restriction endonuclease. (321 aa)    
Predicted Functional Partners:
EDZ44953.1
Sulfopyruvate decarboxylase subunit alpha; [R] COG4032 Predicted thiamine-pyrophosphate-binding protein.
   
    0.700
EDZ48041.1
Iron-sulfur cluster-binding protein; [C] COG1145 Ferredoxin.
   
    0.692
hsdM
[V] COG0286 Type I restriction-modification system methyltransferase subunit.
 
  
 0.595
EDZ46465.1
[L] COG1961 Site-specific recombinases, DNA invertase Pin homologs.
       0.581
EDZ47025.1
EcoEI R C-terminal domain protein; [KL] COG1061 DNA or RNA helicases of superfamily II.
 
  
 0.564
EDZ46205.1
Type I site-specific deoxyribonuclease chain S; [V] COG0732 Restriction endonuclease S subunits.
 
  
 0.405
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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