STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47719.1[C] COG3038 Cytochrome B561; Belongs to the UPF0312 family. (416 aa)    
Predicted Functional Partners:
RBY4I_598
YceI; [S] COG2353 Uncharacterized conserved protein; Belongs to the UPF0312 family.
 
  
 0.845
EDZ46982.1
YceI like family; [S] COG2353 Uncharacterized conserved protein; Belongs to the UPF0312 family.
 
  
 0.703
fabD
[I] COG0331 (acyl-carrier-protein) S-malonyltransferase.
       0.608
RBY4I_301
Glucans biosynthesis glucosyltransferase H; [M] COG2943 Membrane glycosyltransferase.
 
     0.469
acpD
Acyl carrier protein phosphodiesterase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.
     
 0.467
EDZ48450.1
Lipoprotein, putative; [M] COG3064 Membrane protein involved in colicin uptake.
  
     0.439
EDZ46165.1
Conserved hypothetical protein.
  
     0.412
EDZ46657.1
Twin-arginine translocation pathway signal; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).
 
     0.411
EDZ48769.1
Lipoprotein, putative; [S] COG3147 Uncharacterized protein conserved in bacteria.
 
     0.402
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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