STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Coexpression
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[Homology]
Score
paaDPhenylacetic acid degradation protein PaaD; [Q] COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism. (141 aa)    
Predicted Functional Partners:
paaF
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 0.981
paaI
phenylacetate-CoA oxygenase, PaaI subunit; [S] COG3396 Uncharacterized conserved protein.
 
 
 0.978
paaH
phenylacetate-CoA oxygenase, PaaH subunit; [Q] COG3460 Uncharacterized enzyme of phenylacetate metabolism.
 
 
 0.975
paaJ
phenylacetate-CoA oxygenase, PaaJ subunit; [R] COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.
 
 
 0.973
paaG
phenylacetate-CoA oxygenase, PaaG subunit; [S] COG3396 Uncharacterized conserved protein.
 
 
 0.973
paaN
Phenylacetic acid degradation protein paaN; [C] COG1012 NAD-dependent aldehyde dehydrogenases.
 
 
 0.926
paaK
Phenylacetic acid degradation oxidoreductase PaaK; [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
 
 
  0.918
RBY4I_689
Phenylacetic acid catabolic family protein; [S] COG3396 Uncharacterized conserved protein.
 
 
 0.917
paaB
Phenylacetate degradation probable enoyl-CoA hydratase paaB; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
 
 0.906
RBY4I_833
PaaX domain protein; [K] COG3327 Phenylacetic acid-responsive transcriptional repressor.
 
   
 0.845
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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