STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pcaC4-carboxymuconolactone decarboxylase; [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit. (131 aa)    
Predicted Functional Partners:
pcaD
3-oxoadipate enol-lactonase; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
  
  0.980
pcaH
[Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
 
 
 0.957
pcaG
[Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
 
 
 0.956
pcaB
3-carboxy-cis,cis-muconate cycloisomerase; [F] COG0015 Adenylosuccinate lyase.
 
 
 0.917
EDZ46312.1
Hydrolase, alpha/beta fold family; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
   
  0.859
RBY4I_588
[S] COG3246 Uncharacterized conserved protein.
    
  0.796
pobA
4-hydroxybenzoate 3-monooxygenase; [HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
 
     0.768
RBY4I_306
[S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
  
     0.758
pcaQ
Pca operon transcription factor PcaQ; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.677
RBY4I_134
Chlorocatechol 1,2-dioxygenase; [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
 
 
 0.605
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.