STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47779.1Cupin family protein; [S] COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain. (145 aa)    
Predicted Functional Partners:
EDZ46207.1
Monooxygenase domain protein; [ER] COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
 
     0.946
EDZ48082.1
Transcriptional regulator, AraC family; [K] COG2207 AraC-type DNA-binding domain-containing proteins.
 
     0.798
EDZ48235.1
Cyclase family protein; [R] COG1878 Predicted metal-dependent hydrolase.
 
    0.602
RBY4I_706
[C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.
  
     0.505
hemN
[H] COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.419
EDZ48226.1
Hypothetical protein.
       0.419
EDZ45857.1
Integral membrane protein DUF6; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
     0.413
badA
Benzoate-coenzyme A ligase; [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
 
 
   0.413
EDZ45991.1
Putative trap-type c4-dicarboxylate transport system, small permease component; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.409
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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