STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scpASegregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. (264 aa)    
Predicted Functional Partners:
scpB
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
 
 
 0.999
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
 
 
 0.980
EDZ46168.1
OmpA/MotB; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
 
 0.907
EDZ46529.1
Putative peptidoglycan binding domain protein.
  
 
 0.907
RBY4I_64
ABC transporter, inner membrane subunit; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.907
EDZ47314.1
beta-N-acetylhexosaminidase; [G] COG1472 Beta-glucosidase-related glycosidases.
  
    0.846
cmk
[F] COG0283 Cytidylate kinase.
 
  
 0.736
EDZ47045.1
Sporulation domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.647
EDZ48325.1
Hypothetical protein.
       0.615
argS
[J] COG0018 Arginyl-tRNA synthetase.
  
    0.549
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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