EDZ47865.1 protein (Rhodobacterales bacterium Y4I)

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EDZ47865.1

Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators. (110 aa)

Predicted Functional Partners:

rpmC

0.894

rpsC

0.864

rpsS

0.854

rplW

0.848

rplR

0.841

rpsE

0.841

RBY4I_863

0.831

rpsM

0.828

rpsQ

0.826

rplE

0.824

Your Current Organism:

Rhodobacterales bacterium Y4I

NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDZ47865.1	RBY4I_863	RBY4I_3085	RBY4I_863	Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.	TPR repeat family protein; [S] COG2938 Uncharacterized conserved protein.	0.831
EDZ47865.1	rplE	RBY4I_3085	RBY4I_2827	Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.	Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	0.824
EDZ47865.1	rplR	RBY4I_3085	RBY4I_1382	Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.	Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.841
EDZ47865.1	rplW	RBY4I_3085	RBY4I_1267	Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.	Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.848
EDZ47865.1	rpmC	RBY4I_3085	RBY4I_1257	Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.	[J] COG0255 Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.894
EDZ47865.1	rpsC	RBY4I_3085	RBY4I_3776	Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.864
EDZ47865.1	rpsE	RBY4I_3085	RBY4I_3119	Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.	Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.841
EDZ47865.1	rpsM	RBY4I_3085	RBY4I_3372	Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.	Ribosomal protein S13p/S18e; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.	0.828
EDZ47865.1	rpsQ	RBY4I_3085	RBY4I_2350	Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.	Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.826
EDZ47865.1	rpsS	RBY4I_3085	RBY4I_898	Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.	Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.854
RBY4I_863	EDZ47865.1	RBY4I_863	RBY4I_3085	TPR repeat family protein; [S] COG2938 Uncharacterized conserved protein.	Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.	0.831
rplE	EDZ47865.1	RBY4I_2827	RBY4I_3085	Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.	0.824
rplE	rplR	RBY4I_2827	RBY4I_1382	Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.999
rplE	rplW	RBY4I_2827	RBY4I_1267	Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.996
rplE	rpmC	RBY4I_2827	RBY4I_1257	Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	[J] COG0255 Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.997
rplE	rpsC	RBY4I_2827	RBY4I_3776	Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplE	rpsE	RBY4I_2827	RBY4I_3119	Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.999
rplE	rpsM	RBY4I_2827	RBY4I_3372	Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	Ribosomal protein S13p/S18e; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.	0.999
rplE	rpsQ	RBY4I_2827	RBY4I_2350	Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.999
rplE	rpsS	RBY4I_2827	RBY4I_898	Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999