STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_31CsbD-like superfamily; [S] COG3237 Uncharacterized protein conserved in bacteria; Belongs to the UPF0337 (CsbD) family. (65 aa)    
Predicted Functional Partners:
RBY4I_6
[R] COG3871 Uncharacterized stress protein (general stress protein 26).
 
    0.901
EDZ47934.1
Conserved hypothetical protein; [S] COG5487 Small integral membrane protein.
 
    0.818
EDZ47439.1
Conserved hypothetical protein; [S] COG5487 Small integral membrane protein.
 
    0.817
EDZ48561.1
CsbD-like superfamily; [S] COG3237 Uncharacterized protein conserved in bacteria; Belongs to the UPF0337 (CsbD) family.
  
     0.772
EDZ46374.1
Twin-arginine translocation pathway signal; [S] COG2930 Uncharacterized conserved protein.
  
    0.655
EDZ44967.1
[S] COG3360 Uncharacterized conserved protein.
   
    0.570
EDZ46507.1
Polysaccharide biosynthesis/export protein; [M] COG0797 Lipoproteins.
   
    0.530
EDZ46864.1
Ferritin and Dps; [P] COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); Belongs to the Dps family.
 
  
 0.492
RBY4I_39
[M] COG0668 Small-conductance mechanosensitive channel.
 
    0.456
RBY4I_44
Hypothetical protein.
       0.450
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.