Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47963.1Transcriptional regulator, GntR family; [K] COG1802 Transcriptional regulators. (222 aa)    
Predicted Functional Partners:
EDZ47699.1
Transcriptional regulator, GntR family; [K] COG2186 Transcriptional regulators.
  
     0.771
RBY4I_432
Transcriptional regulator, GntR family; [K] COG1802 Transcriptional regulators.
  
     0.768
EDZ47018.1
Transcriptional regulator, GntR family; [K] COG1802 Transcriptional regulators.
  
     0.767
EDZ47875.1
Transcriptional regulator, GntR family; [K] COG1802 Transcriptional regulators.
  
     0.738
pdhR
Pyruvate dehydrogenase complex repressor; [K] COG1802 Transcriptional regulators.
  
  
 0.597
EDZ46189.1
Transcriptional regulator, XRE family; [K] COG1396 Predicted transcriptional regulators.
       0.523
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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