STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47966.1ATPase, AAA family; [R] COG0714 MoxR-like ATPases. (279 aa)    
Predicted Functional Partners:
EDZ48178.1
VWA containing CoxE family protein; [S] COG3825 Uncharacterized protein conserved in bacteria.
 
    0.898
dksA
RNA polymerase-binding protein DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
       0.606
EDZ46756.1
Conserved hypothetical protein.
       0.555
EDZ48433.1
[E] COG1982 Arginine/lysine/ornithine decarboxylases.
   
 
 0.538
EDZ46632.1
[I] COG1960 Acyl-CoA dehydrogenases.
  
     0.496
EDZ47012.1
[I] COG1960 Acyl-CoA dehydrogenases.
  
     0.488
EDZ46221.1
Conserved hypothetical protein.
       0.440
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.