STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47968.1Transposase; [L] COG2801 Transposase and inactivated derivatives. (285 aa)    
Predicted Functional Partners:
RBY4I_555
Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.
     0.870
EDZ46858.1
Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.
     0.652
EDZ47254.1
Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.
     0.652
EDZ47273.1
Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.
     0.652
RBY4I_648
Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives.
     0.643
EDZ46647.1
Ferredoxin; [C] COG0633 Ferredoxin.
    
   0.406
paaK
Phenylacetic acid degradation oxidoreductase PaaK; [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
    
   0.406
EDZ48635.1
Reductive dehalogenase subfamily, putative; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
    
   0.406
EDZ45002.1
Oxidoreductase, FAD-binding; [C] COG0633 Ferredoxin.
    
   0.406
RBY4I_717
Vanillate O-demethylase oxidoreductase; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
    
   0.406
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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