STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47972.1AtsE; [N] COG5622 Protein required for attachment to host cells. (151 aa)    
Predicted Functional Partners:
EDZ48246.1
Hypothetical protein.
       0.816
EDZ48736.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; PRC-barrel domain, putative.
  
     0.707
rarD_1
RarD protein; [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
       0.579
EDZ46771.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.577
EDZ48095.1
Conserved hypothetical protein, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.570
sodB
Superoxide dismutase, Fe; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
       0.569
RBY4I_507
Outer membrane protein, OmpA/MotB family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.552
EDZ47215.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.547
EDZ46823.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.529
RBY4I_349
[TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
     0.446
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.