STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RBY4I_320Phosphonate metabolim protein, transferase hexapeptide repeat family; [R] COG0110 Acetyltransferase (isoleucine patch superfamily). (204 aa)    
Predicted Functional Partners:
RBY4I_623
Phosphonate uptake transporter; [E] COG0765 ABC-type amino acid transport system, permease component.
 
     0.737
phnE_3
Phosphonate ABC transporter, permease protein PhnE; [P] COG2011 ABC-type metal ion transport system, permease component.
 
     0.724
phnD
[P] COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.
 
     0.632
RBY4I_421
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
      0.622
EDZ46684.1
Aminotransferase, DegT/DnrJ/EryC1/StrS family; [M] COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.572
EDZ48756.1
Aminotransferase, DegT/DnrJ/EryC1/StrS family; [M] COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.572
phnJ
Phosphonate metabolism protein PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
 
     0.567
phnK
Phosphonate C-P lyase system protein PhnK; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase.
 
     0.557
EDZ47744.1
[P] COG3626 Uncharacterized enzyme of phosphonate metabolism.
 
     0.549
EDZ48131.1
Phosphonate C-P lyase system protein PhnH; [P] COG3625 Uncharacterized enzyme of phosphonate metabolism.
 
     0.536
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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