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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDZ47983.1FAD dependent oxidoreductase; [E] COG0665 Glycine/D-amino acid oxidases (deaminating). (443 aa)    
Predicted Functional Partners:
EDZ45988.1
Sarcosine oxidase, alpha subunit family; [E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
 0.945
EDZ47679.1
Sarcosine oxidase, alpha subunit family; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the GcvT family.
 
 0.944
RBY4I_402
Sarcosine oxidase, alpha subunit family; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the GcvT family.
 
 0.944
RBY4I_37
Opine oxidase subunit A; [O] COG0492 Thioredoxin reductase.
 0.915
EDZ48643.1
Hypothetical protein; [C] COG2218 Formylmethanofuran dehydrogenase subunit C; Conserved region in glutamate synthase family.
  
 
 0.774
RBY4I_578
Sarcosine oxidase, delta subunit, heterotetrameric; [E] COG4311 Sarcosine oxidase delta subunit.
  
 0.727
EDZ47406.1
Sarcosine oxidase, delta subunit, heterotetrameric; [E] COG4311 Sarcosine oxidase delta subunit.
  
  0.666
soxD_1
[E] COG4311 Sarcosine oxidase delta subunit.
  
  0.666
RBY4I_938
[E] COG4583 Sarcosine oxidase gamma subunit.
  
  0.652
soxG
[E] COG4583 Sarcosine oxidase gamma subunit.
  
  0.628
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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