STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDZ48012.1[GEPR] COG0477 Permeases of the major facilitator superfamily. (405 aa)    
Predicted Functional Partners:
EDZ48062.1
phospholipase/Carboxylesterase; [R] COG0400 Predicted esterase.
 
   
 0.682
EDZ46032.1
Conserved hypothetical protein.
  
  0.644
EDZ47990.1
HhH-GPD; [L] COG0177 Predicted EndoIII-related endonuclease.
     
 0.638
EDZ48470.1
Hypothetical protein.
       0.569
RBY4I_116
Secretion protein HlyD family protein; [V] COG1566 Multidrug resistance efflux pump.
   
  0.545
EDZ48065.1
Type I secretion membrane fusion protein, HlyD; [M] COG0845 Membrane-fusion protein.
   
  0.545
EDZ48294.1
Type I secretion membrane fusion protein, HlyD; [M] COG0845 Membrane-fusion protein.
   
  0.545
EDZ48715.1
Secretion protein HlyD; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
  0.545
copB
Copper tolerance protein; [MU] COG1538 Outer membrane protein.
   
  0.517
EDZ46571.1
Outer membrane efflux protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
  0.517
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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