STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_325OmpA/MotB; [N] COG1360 Flagellar motor protein. (282 aa)    
Predicted Functional Partners:
RBY4I_317
Chemotaxis protein MotA; [N] COG1291 Flagellar motor component.
 0.999
flgK
[N] COG1256 Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.
 
  
 0.989
flgE
[N] COG4786 Flagellar basal body rod protein.
 
  
 0.977
flgI
Flagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
  
 0.943
RBY4I_215
CheW protein; [NT] COG0835 Chemotaxis signal transduction protein.
  
  
 0.941
fliF
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
  
 0.937
cheA
Chemotaxis protein CheA; [T] COG0642 Signal transduction histidine kinase.
 
  
 0.936
EDZ46282.1
Flagellar hook-associated protein FlgL family protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
  
 0.931
EDZ46337.1
HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.
  
  
 0.923
EDZ48028.1
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; [T] COG2202 FOG: PAS/PAC domain.
  
  
 0.923
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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