STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_326Conserved hypothetical protein. (79 aa)    
Predicted Functional Partners:
EDZ47436.1
Conserved hypothetical protein.
  
     0.707
phaP
Phasin, PhaP; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.651
RBY4I_615
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.607
EDZ48156.1
Conserved hypothetical protein.
  
     0.605
EDZ48400.1
Conserved hypothetical protein.
  
     0.603
EDZ47335.1
[S] COG1739 Uncharacterized conserved protein.
       0.561
RBY4I_838
Peptidase, M48 family; [O] COG0501 Zn-dependent protease with chaperone function.
       0.552
EDZ48316.1
Conserved hypothetical protein.
  
     0.540
EDZ46939.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.523
EDZ47329.1
Rhomboid family protein; [R] COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).
  
     0.519
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.